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1. Start page (upper), sample help page (middle), repeat alignment displayed with JalView () (lower), a


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2. ROC plot comparing HHrep with and without secondary structure scoring to the method TRUST ()


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3. The 2-, 4- and 8-fold repeat pattern in TIM barrel sequences


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4. Dissertation zur Erlangung des Doktorgrades

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5. Sample output of HHsenser showing a part of the stringent alignment of lytic transglycosilases obtai


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6. Simplified flow chart (left) and schematic diagram of HHsenser (right)


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7. HHsenser: exhaustive transitive profile search using HMM-HMM comparison

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8. HHrep: de novo protein repeat detection and the origin of TIM barrels. Nucleic Acids Res

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9. HHsenser: exhaustive transitive profile search using HMM-HMM comparison. Nucleic Acids Res

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10. Input and result pages of PSI-BLAST with overlaid windows for genome databases and Jalview alignment


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